Package index • ambre

All functions

annual_cost(): Annual cost
collective_treatment_cost_calculation(): Collective treatment cost calculation
config_ambre: config_ambre
create_random_distribution(): Create random distribution
create_scenario(): Create Exposure Scenario
create_scenario_from_df(): Create Exposure Scenario from a data.frame
dalys_calculation(): Dalys calculation
distribution_repeater(): Helper function: distribution repeater
dr.betapoisson(): Dose-response model: beta-poisson
dr.expo(): Dose-response model: exponential
enumeration(): Enumerate Elements
final_dose_calculation(): Final dose calculation
generate_random_values(): Create random distribution based on configuration file
get_exposure_value_or_stop(): Get exposure value or stop
get_infection_prob(): Get infection probability values
get_risk_total(): Get risk total
get_scheme_events_wide(): Calculate Wide-Format Treatment Scheme Events
get_tbl_risk(): Get table risk
get_treatment_data(): Simulate treatment data for pathogen processes
illness_probability_calculation(): Illness probability calculation
infection_probability_calculation(): Infection probability calculation
inflow_concentration(): Inflow concentration
inflow_concentration_custom(): Inflow concentration custom
initial_dose_calculation(): Initial dose concentration
irrigation_need_calculation(): Irrigation need calculation
percentage_irrigation_need(): Percentage irrigation need
perimeter_calculation(): Perimeter calculation
plot_comparison_qmra_initial_vs_supplementary_processes(): Plot comparison QMRA calculation with initial vs supplementary processes
plot_dalys(): Plot dalys
plot_infection_probability(): Plot infection probability
plot_inflow(): Plot inflow concentration
plot_logreduction(): Plot log reduction
plot_volumes(): Plot volume
process_cost_calculation(): Barrier Cost Calculation
query_barrier(): Barrier Query
query_crop(): Crop Query
query_crop_height(): Query crop height
query_exp_path(): Path Query
query_frequency(): Query frequency
query_irrigation_need(): Query irrigation need
query_matrix(): Query Matrix
query_pathogen(): Pathogen Query
query_pop(): Population Query
query_volume(): Query volume
regulation_matrix_concentration(): Concentration reduction matrix calculation
regulation_matrix_log(): Log reduction matrix calculation
retrieve_specific_barrier(): Apply barriers' specific log-reduction to a config
run_economic_analysis(): Run economic analysis
run_qmra_custom(): Run QMRA custom
run_qmra_initial_situation(): Run QMRA on initial situation
run_qmra_learning_case(): QMRA on learning case
run_qmra_supplementary_process(): Run QMRA on addition process
simulate_exposure(): Simulate: exposure
simulate_inflow(): Simulate: inflow
simulate_treatment(): Simulate Treatment
total_area_calculation(): Total area
total_investment_cost(): Total investment cost
total_irrigation_need(): Total irrigation need
update_concentration(): Update concentration with desired value
update_frequency(): Frequency update
update_frequency_with_desired_value(): Updated frequency with desired value
update_logreduction_decay(): Update log reduction for decay barrier
update_logreduction_path(): Update log reduction for specific path
update_logreduction_specific_barrier(): Update log reduction with specific value
update_monte_carlo(): Update monte carlo value
update_pathogen(): Pathogen update
update_treatment_scheme(): Update treatment scheme
update_volume(): Volume update
update_volume_with_desired_value(): Update volume with desired value
water_price(): Water charge