Pathogen update — update_pathogen • ambre

Update the configuration with list of pathogen to be simulated according to pathogen ID

Usage

update_pathogen(scenario, pathoName)

Arguments

scenario: list obtain from create_scenario()
pathoName: character name of the pathogens simulated

Value

scenario_updated list scenario updated with the pathogens to be simulated

Examples

scenario_test <- create_scenario(
  system.file("input_1culture_2pop.xlsx", package = "ambre")
)

scenario_updated <- update_pathogen(scenario = scenario_test,
 pathoName = c("Campylobacter jejuni", "Rotavirus"))